miRBase entry: cbn-mir-52-1

Stem-loop cbn-mir-52-1

Accession

MI0024833

Description

Caenorhabditis brenneri cbn-mir-52-1 precursor miRNA

Sequence

CACCCGUACAUAUGUUUCCGUGCUugacaaugaguucaaucacgucacaauuuaugggucg
.(((((((.((.(((...((((.((((........)))).))))..))))).)))))))..

Structure

-C       C  A   UUC    C    caa 
  ACCCGUA AU UGU   CGUG Uuga   u
  ||||||| || |||   |||| ||||    
  uggguau ua aca   gcac aacu   g
gc       u  -   -cu    u    uga

Annotation confidence Not enough data

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Genome context

Cbre_Contig147: 145718-145778 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-52-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-52

Accession	MIMAT0029686
Description	Caenorhabditis brenneri cbn-miR-52 mature miRNA
Sequence	1 - CACCCGUACAUAUGUUUCCGUGCU - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508