miRBase entry: cbn-mir-54

Stem-loop cbn-mir-54

Accession

MI0024835

Description

Caenorhabditis brenneri cbn-mir-54 precursor miRNA

Sequence

gggauaugagaggacgaguacauugaauucaaccauuacuugUACCCGUAAUCUUCAUAAUCCGAG
.((((((((((..(((.(((((...(((......)))...))))).)))..)).)))).))))...

Structure

--g    -    -  gg   a     uug   uc 
   ggau auga ga  acg guaca   aau  a
   |||| |||| ||  ||| |||||   |||   
   CCUA UACU CU  UGC CAUgu   uua  a
GAG    A    U  AA   C     uca   cc

Annotation confidence Not enough data

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Genome context

Cbre_Contig2: 2465213-2465278 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-54

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-54

Accession	MIMAT0029687
Description	Caenorhabditis brenneri cbn-miR-54 mature miRNA
Sequence	43 - UACCCGUAAUCUUCAUAAUCCGAG - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508