miRBase entry: cbn-mir-55

Stem-loop cbn-mir-55

Accession

MI0024836

Description

Caenorhabditis brenneri cbn-mir-55 precursor miRNA

Sequence

aggcggaaguauagaggguauacuucaucaaguaacuaUACCCGUAUAUAUUUCUGCUUAG
(((((((((((((..((((((((((....)))))....)))))...)))))))))))))..

Structure

--             -ga     ----     c 
  aggcggaaguaua   gggua    uacuu a
  |||||||||||||   |||||    |||||  
  UUCGUCUUUAUAU   CCCAU    augaa u
GA             AUG     auca     c

Annotation confidence Not enough data

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Genome context

Cbre_Contig2: 2465352-2465412 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-55

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-55

Accession	MIMAT0029688
Description	Caenorhabditis brenneri cbn-miR-55 mature miRNA
Sequence	39 - UACCCGUAUAUAUUUCUGCUUAG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508