miRBase entry: cbn-mir-64h-1

Stem-loop cbn-mir-64h-1

Accession

MI0024851

Description

Caenorhabditis brenneri cbn-mir-64h-1 precursor miRNA

Sequence

AAUGACAAUUAAUCGCAAUUGGAccauccgaacuuuaagggcuccgauugcguuaguuggcauag
.(((.(((((((.((((((((((...(((.........))).))))))))))))))))).)))..

Structure

-A   A       U          cca   gaa 
  AUG CAAUUAA CGCAAUUGGA   ucc   c
  ||| ||||||| ||||||||||   |||   u
  uac guugauu gcguuagccu   ggg   u
ga   g       -          --c   aau

Annotation confidence Not enough data

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Genome context

Cbre_Contig274: 39311-39375 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from cbn-mir-64h-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-64h

Accession	MIMAT0029701
Description	Caenorhabditis brenneri cbn-miR-64h mature miRNA
Sequence	1 - AAUGACAAUUAAUCGCAAUUGGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508