miRBase entry: cbn-mir-64c-1

Stem-loop cbn-mir-64c-1

Accession

MI0024856

Description

Caenorhabditis brenneri cbn-mir-64c-1 precursor miRNA

Sequence

UAUGACACAUAUGCGUAGUUGGAccauccaacaccauaggauccaaccacaauaugugugauagu
(((.((((((((..((.((((((...(((.........))))))))).)).)))))))).)))..

Structure

--   G        GC  A      cca   aac 
  UAU ACACAUAU  GU GUUGGA   ucc   a
  ||| ||||||||  || ||||||   |||   c
  aua uguguaua  ca caaccu   agg   c
ug   g        -a  c      ---   aua

Annotation confidence Not enough data

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Genome context

Cbre_Contig230: 84417-84481 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cbn-mir-64c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-64c

Accession	MIMAT0029705
Description	Caenorhabditis brenneri cbn-miR-64c mature miRNA
Sequence	1 - UAUGACACAUAUGCGUAGUUGGA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508