miRBase entry: cbn-mir-43-1

Stem-loop cbn-mir-43-1

Accession

MI0024893

Description

Caenorhabditis brenneri cbn-mir-43-1 precursor miRNA

Sequence

gauaucaaggaacuugugauuuaugccauaacuaacauaaccucgacaUAUCACAGUUUACUUGCUGUCGC
((((.(((((((((.((((((((((..........))))).........)))))))))).)))).))))..

Structure

--    u    -     u     ---------     ccau 
  gaua caag gaacu gugau         uuaug    a
  |||| |||| ||||| |||||         |||||     
  CUGU GUUC UUUGA CACUA         aauac    a
CG    C    A     -     Uacagcucc     aauc

Annotation confidence Not enough data

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Genome context

Cbre_Contig144: 117558-117628 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-43-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-43

Accession	MIMAT0029724
Description	Caenorhabditis brenneri cbn-miR-43 mature miRNA
Sequence	49 - UAUCACAGUUUACUUGCUGUCGC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508