miRBase entry: cbn-mir-250-1

Stem-loop cbn-mir-250-1

Accession

MI0024895

Description

Caenorhabditis brenneri cbn-mir-250-1 precursor miRNA

Sequence

ccggcaguugccuguugauccgccgcaauuaugauggacgAAUCACAGUCAACUGUUGGCA
((((((((((.((((.(((.(((((((....)).))).)).))))))).))))))))))..

Structure

--          c    u   c  -   -  a 
  ccggcaguug cugu gau cg ccg ca u
  |||||||||| |||| ||| || ||| ||  
  GGUUGUCAAC GACA CUA gc ggu gu u
AC          U    -   A  a   a  a

Annotation confidence Not enough data

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Genome context

Cbre_Contig1461: 4162-4222 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-250-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-250

Accession	MIMAT0029725
Description	Caenorhabditis brenneri cbn-miR-250 mature miRNA
Sequence	41 - AAUCACAGUCAACUGUUGGCA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508