Stem-loop cbn-mir-238

Accession

MI0024897

Description

Caenorhabditis brenneri cbn-mir-238 precursor miRNA

Sequence

uggaugugaucggguguaaaaagcuauccacgaagaaucgcUUUGUACUCCGAUGCCAUUCAGA
((((((..((((((.(((.(((((..((......))...))))).)))))))))..))))))..

Structure

--      ug      u   a     -ua  ca 
  uggaug  aucggg gua aaagc   uc  c
  ||||||  |||||| ||| |||||   ||   
  ACUUAC  UAGCCU CAU UUUcg   ag  g
AG      CG      -   G     cua  aa 

Annotation confidence Not enough data

Genome context

Cbre_Contig7: 1125977-1126040 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbn-mir-238

Mature cbn-miR-238

• Accession: MIMAT0029726
• Description: Caenorhabditis brenneri cbn-miR-238 mature miRNA
• Sequence: 42 - UUUGUACUCCGAUGCCAUUCAGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508