miRBase entry: cbn-mir-239d-1

Stem-loop cbn-mir-239d-1

Accession

MI0024902

Description

Caenorhabditis brenneri cbn-mir-239d-1 precursor miRNA

Sequence

UUUGUACCGAUUAUAGGCAACUGAuuuuugaacguuuucagugccuauuucaguacaaua
.((((((.((..(((((((.((((.............))))))))))).)).))))))..

Structure

-U      C  UU       A    uuuuu 
  UUGUAC GA  AUAGGCA CUGA     g
  |||||| ||  ||||||| ||||     a
  aacaug cu  uauccgu gacu     a
au      a  -u       -    uuugc

Annotation confidence Not enough data

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Genome context

Cbre_Contig205: 208242-208301 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbn-mir-239d-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-239d

Accession	MIMAT0029730
Description	Caenorhabditis brenneri cbn-miR-239d mature miRNA
Sequence	1 - UUUGUACCGAUUAUAGGCAACUGA - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508