miRBase entry: cbn-mir-228-1

Stem-loop cbn-mir-228-1

Accession

MI0024935

Description

Caenorhabditis brenneri cbn-mir-228-1 precursor miRNA

Sequence

AAUGGCACUGCAUGAAUUCACGGaugcauugcgacagaccgcggaucaugcgguaccauag
.((((.(((((((((.(((.(((.((........))..))).)))))))))))).))))..

Structure

-A    C         A   A   -a  cau 
  AUGG ACUGCAUGA UUC CGG  ug   u
  |||| ||||||||| ||| |||  ||    
  uacc uggcguacu agg gcc  ac   g
ga    a         -   c   ag  agc

Annotation confidence Not enough data

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Genome context

Cbre_Contig521: 31336-31396 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-228-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-228

Accession	MIMAT0029753
Description	Caenorhabditis brenneri cbn-miR-228 mature miRNA
Sequence	1 - AAUGGCACUGCAUGAAUUCACGG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508