Stem-loop cbn-mir-235

Accession

MI0024941

Description

Caenorhabditis brenneri cbn-mir-235 precursor miRNA

Sequence

agguccuggcugacugcauauauugcucaacguuaaagaaugcuaaUAUUGCACUCGCCCCGGCCUGA
(((((..(((.((.((((.(((((((...............)).))))))))).)))))..)))))..

Structure

--     cu   u  c    u     -  ucaacg 
  agguc  ggc ga ugca auauu gc      u
  |||||  ||| || |||| ||||| ||      u
  UCCGG  CCG CU ACGU UAUaa cg      a
AG     CC   -  C    -     u  uaagaa 

Annotation confidence Not enough data

Genome context

Cbre_Contig98: 204892-204959 [+]

Mature cbn-miR-235

• Accession: MIMAT0029757
• Description: Caenorhabditis brenneri cbn-miR-235 mature miRNA
• Sequence: 47 - UAUUGCACUCGCCCCGGCCUGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508