miRBase entry: cbn-mir-249

Stem-loop cbn-mir-249

Accession

MI0024954

Description

Caenorhabditis brenneri cbn-mir-249 precursor miRNA

Sequence

aacgcuagaagucuacuguuagacagaguacagaaauuuugUCACAGGACUUUUGAGCGUUGC
(((((((((((((..((((..((((((((......))))))))))))))))))).))))))..

Structure

--      -       ua    ua        ac 
  aacgcu agaaguc  cugu  gacagagu  a
  |||||| |||||||  ||||  ||||||||   
  UUGCGA UUUUCAG  GACA  CUguuuua  g
CG      G       --    --        aa

Annotation confidence Not enough data

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Genome context

Cbre_Contig0: 1355964-1356026 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbn-mir-249

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-249

Accession	MIMAT0029766
Description	Caenorhabditis brenneri cbn-miR-249 mature miRNA
Sequence	42 - UCACAGGACUUUUGAGCGUUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508