Stem-loop tgu-mir-7643

Accession

MI0024980

Description

Taeniopygia guttata tgu-mir-7643 precursor miRNA

Literature search

1 open access papers mention tgu-mir-7643
(1 sentences)

Sequence

caaggggaagGUGACUGAGACAUGAUGCUCAUaaugaccuuuguaaauGACAUCUGUUUCUCAGUCAACAacucccuugauuugcccucauccugacaguggcuuuugugaa
(((((((...((((((((((...((((.((((..............))))))))....)))))))).))...)))))))....(((((.........)).))).........

Structure

---------------------------------       aag  -        -CAU    C    aaugac 
                                 caagggg   GU GACUGAGA    GAUG UCAU      c
                                 |||||||   || ||||||||    |||| ||||       
                                 guucccu   CA CUGACUCU    CUAC AGua      u
aaguguuuucggugacaguccuacucccguuua       caA  A        UUGU    -    aauguu 

Annotation confidence Low

Genome context

chr1: 95578094-95578205 [+]

Mature tgu-miR-7643-5p

• Accession: MIMAT0029786
• Description: Taeniopygia guttata tgu-miR-7643-5p mature miRNA
• Sequence: 11 - GUGACUGAGACAUGAUGCUCAU - 32
• Evidence: experimental ; Illumina [1]

Mature tgu-miR-7643-3p

• Accession: MIMAT0029787
• Description: Taeniopygia guttata tgu-miR-7643-3p mature miRNA
• Sequence: 49 - GACAUCUGUUUCUCAGUCAACA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727