Stem-loop tgu-mir-7645

Accession

MI0024982

Description

Taeniopygia guttata tgu-mir-7645 precursor miRNA

Literature search

1 open access papers mention tgu-mir-7645
(1 sentences)

Sequence

caggcguugaacaauaaacuucaauuccuuugcacccacaccgagaGUCCCCUUAAACCAAGCUCUGAgcaaauaaaguuUCGGGCUUGAUUUAAGAGGACUcuucgugcgc
.(((.((((((........)))))).))).........(((.((((((((.((((((.(((((((.((((.......)))).))))))).)))))).)))))))).)))...

Structure

caggcguugaacaauaaacuucaauuccuuugcaccca   c        C      C       U    aa 
                                      cac gagaGUCC CUUAAA CAAGCUC GAgc  a
                                      ||| |||||||| |||||| ||||||| ||||  u
                                      gug uucUCAGG GAAUUU GUUCGGG Uuug  a
-----------------------------------cgc   c        A      A       C    aa 

Annotation confidence Not enough data

Genome context

chr20: 10603505-10603616 [+]

Mature tgu-miR-7645-5p

• Accession: MIMAT0029790
• Description: Taeniopygia guttata tgu-miR-7645-5p mature miRNA
• Sequence: 47 - GUCCCCUUAAACCAAGCUCUGA - 68
• Evidence: experimental ; Illumina [1]

Mature tgu-miR-7645-3p

• Accession: MIMAT0029791
• Description: Taeniopygia guttata tgu-miR-7645-3p mature miRNA
• Sequence: 81 - UCGGGCUUGAUUUAAGAGGACU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727