Stem-loop cbr-mir-2231

Accession

MI0025047

Description

Caenorhabditis briggsae cbr-mir-2231 precursor miRNA

Sequence

632 reads, 87.0 reads per million, 3 experiments

AACGGUAUCAACCUCAGGUAGCagagaccacaugacugcuagcUCCCUGAGUAGCUGCCGUUGA
(((((((.....((((((((((((...........))))))....))))))....)))))))..

Structure

--       UCAAC      ----      agac 
  AACGGUA     CUCAGG    UAGCag    c
  |||||||     ||||||    ||||||    a
  UUGCCGU     GAGUCC    aucguc    c
AG       -CGAU      CUcg      agua 

Annotation confidence High

Genome context

chrX: 4430575-4430638 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-2231

Mature cbr-miR-2231-5p

• Accession: MIMAT0053597
• Description: Caenorhabditis briggsae cbr-miR-2231-5p mature miRNA
• Sequence: 1 - AACGGUAUCAACCUCAGGUAGC - 22
• Evidence: experimental ; Illumina [1]

Mature cbr-miR-2231-3p

• Accession: MIMAT0029917
• Description: Caenorhabditis briggsae cbr-miR-2231-3p mature miRNA
• Sequence: 44 - UCCCUGAGUAGCUGCCGUUGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508