Stem-loop cbr-mir-35g-2

Accession

MI0025050

Description

Caenorhabditis briggsae cbr-mir-35g-2 precursor miRNA

Sequence

2719 reads, 258.0 reads per million, 3 experiments

AGCCAAUUUUUUCCGUGGUGAUAuuccgaaacaagugguuaUCACCGGGUAAAAACUGGUAGA
.((((.(((((.((.((((((((..(((.......))).)))))))))).))))).))))...

Structure

--A    A     U  G        uu   aa 
   GCCA UUUUU CC UGGUGAUA  ccg  a
   |||| ||||| || ||||||||  |||  c
   UGGU AAAAA GG GCCACUau  ggu  a
AGA    C     U  -        -u   ga 

Annotation confidence High

Genome context

chrX: 15374624-15374686 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35g-2

Mature cbr-miR-35g-2-5p

• Accession: MIMAT0053599
• Description: Caenorhabditis briggsae cbr-miR-35g-2-5p mature miRNA
• Sequence: 1 - AGCCAAUUUUUUCCGUGGUGAUA - 23
• Evidence: experimental ; Illumina [1]

Mature cbr-miR-35g-3p

• Accession: MIMAT0029919
• Description: Caenorhabditis briggsae cbr-miR-35g-3p mature miRNA
• Sequence: 42 - UCACCGGGUAAAAACUGGUAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508