miRBase entry: cbr-mir-35g-3

Stem-loop cbr-mir-35g-3


Accession
MI0025051
Description
Caenorhabditis briggsae cbr-mir-35g-3 precursor miRNA


Sequence

3040 reads, 285.0 reads per million, 3 experiments
CGCUGGUUUUUUUCCGCGGUGAUAuuccaaaaaaagguuaUCACCGGGUAAAAACUGGUAGA
.((((((((((..((.((((((((..((.......)).)))))))))).))))))))))...

Structure
--C          UU  G        uu  aa 
   GCUGGUUUUU  CC CGGUGAUA  cc  a
   ||||||||||  || ||||||||  ||  a
   UGGUCAAAAA  GG GCCACUau  gg  a
AGA          -U  -        -u  aa 


Annotation confidence High
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Genome context
chrX: 15374070-15374131 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35g-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35g-3-5p

Accession MIMAT0053601
Description Caenorhabditis briggsae cbr-miR-35g-3-5p mature miRNA
Sequence 1 - CGCUGGUUUUUUUCCGCGGUGAUA - 24
Evidence experimental
Illumina [1]

Mature cbr-miR-35g-3p

Accession MIMAT0029919
Description Caenorhabditis briggsae cbr-miR-35g-3p mature miRNA
Sequence 41 - UCACCGGGUAAAAACUGGUAGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508