Stem-loop crm-mir-35h

Accession

MI0025052

Description

Caenorhabditis remanei crm-mir-35h precursor miRNA

Sequence

6860 reads, 66.0 reads per million, 9 experiments

UGCUGGUUUCGACUUCGGUAAUAggucaaaauauaaaaaauaccuaUCACCGGGUGGAAACUGGUGCG
.(((((((((.(((.((((.((((((...............)))))).))))))).)))))))))...

Structure

--U         G   U    A      caaaau 
   GCUGGUUUC ACU CGGU AUAggu      a
   ||||||||| ||| |||| ||||||      u
   UGGUCAAAG UGG GCCA Uaucca      a
GCG         G   -    C      uaaaaa 

Annotation confidence High

Genome context

Crem_Contig93: 221885-221952 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35h

Mature crm-miR-35h-5p

• Accession: MIMAT0056908
• Description: Caenorhabditis remanei crm-miR-35h-5p mature miRNA
• Sequence: 1 - UGCUGGUUUCGACUUCGGUAAUA - 23
• Evidence: experimental ; Illumina [1]

Mature crm-miR-35h-3p

• Accession: MIMAT0029920
• Description: Caenorhabditis remanei crm-miR-35h-3p mature miRNA
• Sequence: 47 - UCACCGGGUGGAAACUGGUGCG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508