miRBase entry: crm-mir-36

Stem-loop crm-mir-36

Accession

MI0025053

Description

Caenorhabditis remanei crm-mir-36 precursor miRNA

Sequence

cgccaauucuuaccgcgguaauagaacugcauaguuucuaUCACCGGGUGAAAAUUCGGCUCG
.(((((((.(((((.((((.((((((((....)).)))))).))))))))).)))).)))...

Structure

--c   -    c     g    a      -  g 
   gcc aauu uuacc cggu auagaa cu c
   ||| |||| ||||| |||| |||||| ||  
   CGG UUAA AGUGG GCCA Uaucuu ga a
GCU   C    A     -    C      u  u

Annotation confidence Not enough data

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Genome context

Crem_Contig93: 221244-221306 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-36

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-36

Accession	MIMAT0029921
Description	Caenorhabditis remanei crm-miR-36 mature miRNA
Sequence	41 - UCACCGGGUGAAAAUUCGGCUCG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508