Stem-loop crm-mir-36

Accession

MI0025053

Description

Caenorhabditis remanei crm-mir-36 precursor miRNA

Sequence

337 reads, 4.0 reads per million, 8 experiments

CGCCAAUUCUUACCGCGGUAAUAgaacugcauaguuucuaUCACCGGGUGAAAAUUCGGCUCG
.(((((((.(((((.((((.((((((((....)).)))))).))))))))).)))).)))...

Structure

--C   -    C     G    A      -  g 
   GCC AAUU UUACC CGGU AUAgaa cu c
   ||| |||| ||||| |||| |||||| ||  
   CGG UUAA AGUGG GCCA Uaucuu ga a
GCU   C    A     -    C      u  u 

Annotation confidence High

Genome context

Crem_Contig93: 221244-221306 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-36

Mature crm-miR-36-5p

• Accession: MIMAT0056909
• Description: Caenorhabditis remanei crm-miR-36-5p mature miRNA
• Sequence: 1 - CGCCAAUUCUUACCGCGGUAAUA - 23
• Evidence: experimental ; Illumina [1]

Mature crm-miR-36-3p

• Accession: MIMAT0029921
• Description: Caenorhabditis remanei crm-miR-36-3p mature miRNA
• Sequence: 41 - UCACCGGGUGAAAAUUCGGCUCG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23363624
   High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
   "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
   "Genome Res (2013) 23:497-508