miRBase entry: cbn-mir-39-1

Stem-loop cbn-mir-39-1

Accession

MI0025057

Description

Caenorhabditis brenneri cbn-mir-39-1 precursor miRNA

Sequence

agcugauuucaaccacgguaauaagcuccauagauagccuaUCACCGGGUGGAAAUCAGUUAG
((((((((((.(((.((((.(((.(((........))).))).))))))).))))))))))..

Structure

--          a   a    a   a   cca 
  agcugauuuc acc cggu aua gcu   u
  |||||||||| ||| |||| ||| |||    
  UUGACUAAAG UGG GCCA Uau cga   a
GA          G   -    C   c   uag

Annotation confidence Not enough data

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Genome context

Cbre_Contig28: 208178-208240 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbn-mir-39-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-39

Accession	MIMAT0029925
Description	Caenorhabditis brenneri cbn-miR-39 mature miRNA
Sequence	42 - UCACCGGGUGGAAAUCAGUUAG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508