miRBase entry: cbn-mir-35a

Stem-loop cbn-mir-35a

Accession

MI0025060

Description

Caenorhabditis brenneri cbn-mir-35a precursor miRNA

Sequence

ugccaguuuuuaccgcugugauacuccaagagacgguuaUCACCGGGUGAAAAUUGGUAGA
((((((((((((((.(.((((((..((.......)).)))))).)))))))))))))))..

Structure

--              g u      cu  aa 
  ugccaguuuuuacc c gugaua  cc  g
  |||||||||||||| | ||||||  ||  a
  AUGGUUAAAAGUGG G CACUau  gg  g
AG              - C      -u  ca

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Cbre_Contig28: 208614-208674 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbn-mir-35a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35a

Accession	MIMAT0029928
Description	Caenorhabditis brenneri cbn-miR-35a mature miRNA
Sequence	40 - UCACCGGGUGAAAAUUGGUAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508