miRBase entry: cbn-mir-35e

Stem-loop cbn-mir-35e

Accession

MI0025064

Description

Caenorhabditis brenneri cbn-mir-35e precursor miRNA

Sequence

agcugauuucacuuucggugauauguccaugaugcgccuaUCACCGGGUGUAAAUUGGCUCG
(((((((((((((..((((((((.((.((...)).)).)))))))))))).)))))))))..

Structure

--         -    uu        u  c  u 
  agcugauuu cacu  cggugaua gu ca  
  ||||||||| ||||  |||||||| || || g
  UCGGUUAAA GUGG  GCCACUau cg gu  
GC         U    --        c  c  a

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 781487-781548 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35e

Accession	MIMAT0029932
Description	Caenorhabditis brenneri cbn-miR-35e mature miRNA
Sequence	41 - UCACCGGGUGUAAAUUGGCUCG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508