miRBase entry: cbn-mir-35j

Stem-loop cbn-mir-35j

Accession

MI0025070

Description

Caenorhabditis brenneri cbn-mir-35j precursor miRNA

Sequence

ugcuguucuuugcugcugugauauuucugagucgugauuaUCACCGGGCGAAUAUCGGCACA
(((((...((((((...((((((..((........)).))))))..))))))...)))))..

Structure

--     uuc      gcu      uu  uga 
  ugcug   uuugcu   gugaua  uc   g
  |||||   ||||||   ||||||  ||    
  ACGGC   AAGCGG   CACUau  ag   u
AC     UAU      -GC      -u  ugc

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 783788-783849 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35j

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35j

Accession	MIMAT0029937
Description	Caenorhabditis brenneri cbn-miR-35j mature miRNA
Sequence	41 - UCACCGGGCGAAUAUCGGCACA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508