miRBase entry: cbn-mir-35l

Stem-loop cbn-mir-35l

Accession

MI0025073

Description

Caenorhabditis brenneri cbn-mir-35l precursor miRNA

Sequence

ugcugauuuuugccacggugauauuucuaaauuaugacuaUCACCGGGUGGAAAUUUGGCACA
((((((((((((((.((((((((..((........)).)))))))))))))))).))))))..

Structure

--      -        a        uu  uaa 
  ugcuga uuuuugcc cggugaua  uc   a
  |||||| |||||||| ||||||||  ||    
  ACGGUU AAAGGUGG GCCACUau  ag   u
AC      U        -        -c  uau

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 784378-784440 [-]

Clustered miRNAs

19 other miRNAs are < 10 kb from cbn-mir-35l

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35l

Accession	MIMAT0029939
Description	Caenorhabditis brenneri cbn-miR-35l mature miRNA
Sequence	41 - UCACCGGGUGGAAAUUUGGCACA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508