miRBase entry: cbn-mir-35b-4

Stem-loop cbn-mir-35b-4

Accession

MI0025076

Description

Caenorhabditis brenneri cbn-mir-35b-4 precursor miRNA

Sequence

agcugauuucucuacuggugauaaguccgaucauaguguuuaUCACCGGGAGUAAAUCUGCUCU
(((.((((((((..(((((((((((.((.......).))))))))))))))).))))).)))..

Structure

--   u     -   ua           u - ga 
  agc gauuu cuc  cuggugauaag c c  u
  ||| ||||| |||  ||||||||||| | |  c
  UCG CUAAA GAG  GGCCACUauuu g g  a
UC   U     U   --           - u au

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 785254-785317 [-]

Clustered miRNAs

18 other miRNAs are < 10 kb from cbn-mir-35b-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35b

Accession	MIMAT0029929
Description	Caenorhabditis brenneri cbn-miR-35b mature miRNA
Sequence	43 - UCACCGGGAGUAAAUCUGCUCU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508