miRBase entry: cbn-mir-35b-5

Stem-loop cbn-mir-35b-5

Accession

MI0025077

Description

Caenorhabditis brenneri cbn-mir-35b-5 precursor miRNA

Sequence

agcugauuucucuacgggugauaauuccaucaagugcuuaUCACCGGGAGUAAAUCUGCUCU
(((.(((((((((...((((((((...(((...))).)))))))).)))).))))).)))..

Structure

--   u     -    acg        uuc   c 
  agc gauuu cucu   ggugauaa   cau  
  ||| ||||| ||||   ||||||||   ||| a
  UCG CUAAA GAGG   CCACUauu   gug  
UC   U     U    --G        --c   a

Annotation confidence Not enough data

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Genome context

Cbre_Contig34: 785498-785559 [-]

Clustered miRNAs

18 other miRNAs are < 10 kb from cbn-mir-35b-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbn-miR-35b

Accession	MIMAT0029929
Description	Caenorhabditis brenneri cbn-miR-35b mature miRNA
Sequence	41 - UCACCGGGAGUAAAUCUGCUCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23363624
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
"Shi Z, Montgomery TA, Qi Y, Ruvkun G"
"Genome Res (2013) 23:497-508