Stem-loop bta-mir-2285y

Accession

MI0025188

Description

Bos taurus bta-mir-2285y precursor miRNA

Literature search

11 open access papers mention bta-mir-2285y
(15 sentences)

Sequence

29190 reads, 18.0 reads per million, 243 experiments

uguugaguuggccAAAAAGUUCGUUUGGAUUUcucuguaauaucuuacggaAAAACCCAAACAAACUUUUUUgaacaacccaaua
(((((.((((..(((((((((.((((((.(((.(((((((....))))))).))).)))))).))).))))))..)))).)))))

Structure

     a    gc      -   C      A   c       u 
uguug guug  cAAAAA GUU GUUUGG UUU ucuguaa a
||||| ||||  |||||| ||| |||||| ||| |||||||  
auaac caac  gUUUUU CAA CAAACC AAA aggcauu u
     c    aa      U   A      C   A       c 

Annotation confidence Medium

Genome context

5: 90832750-90832834 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-2285y

Mature bta-miR-2285y-5p

• Accession: MIMAT0051040
• Description: Bos taurus bta-miR-2285y-5p mature miRNA
• Sequence: 14 - AAAAAGUUCGUUUGGAUUU - 32
• Evidence: experimental ; Illumina [1]

Mature bta-miR-2285y-3p

• Accession: MIMAT0029944
• Description: Bos taurus bta-miR-2285y-3p mature miRNA
• Sequence: 52 - AAAACCCAAACAAACUUUUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103