Stem-loop bta-mir-133c

Accession

MI0025193

Description

Bos taurus bta-mir-133c precursor miRNA

Literature search

15 open access papers mention bta-mir-133c
(51 sentences)

Sequence

79433 reads, 40.0 reads per million, 127 experiments

gccaucaaugcgcagcuACAGCUGGUUGAAGGGGACCAAAuccaucgaacaguugAUUUGGUUCCAUUUUACCAGCUuuagcaaagcauucggu
(((...(((((...((((.(((((((.(((.(((((((((((.((......)).))))))))))).))).))))))).))))...))))).)))

Structure

   auc     gca    C       U   G           c  cg 
gcc   aaugc   gcuA AGCUGGU GAA GGGACCAAAuc au  a
|||   |||||   |||| ||||||| ||| ||||||||||| ||   
ugg   uuacg   cgau UCGACCA UUU CCUUGGUUUAg ug  a
   --c     aaa    u       U   A           u  ac 

Annotation confidence Medium

Genome context

13: 54735653-54735746 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-133c

Mature bta-miR-133c-5p

• Accession: MIMAT0051043
• Description: Bos taurus bta-miR-133c-5p mature miRNA
• Sequence: 18 - ACAGCUGGUUGAAGGGGACCAAA - 40
• Evidence: experimental ; Illumina [1]

Mature bta-miR-133c-3p

• Accession: MIMAT0029949
• Description: Bos taurus bta-miR-133c-3p mature miRNA
• Sequence: 56 - AUUUGGUUCCAUUUUACCAGCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103