Stem-loop bta-mir-2285u

Accession

MI0025197

Description

Bos taurus bta-mir-2285u precursor miRNA

Literature search

11 open access papers mention bta-mir-2285u
(15 sentences)

Sequence

2162467 reads, 420.0 reads per million, 276 experiments

ggaguaugcuggcguUGGCCAAAAUGUUCAUUCcaauuuuucuguaccaucuuacaGAAAAACCCGAACGAACUUUuuggcuaacccaauaguaaauaccc
((.(((((((((.(((((((((((.((((.(((...((((((((((......))))))))))...))).)))).)))))))))))))...)))..))))))

Structure

  a    --   ---  c           U    A   caa          cc 
gg guau  gcu   gg guUGGCCAAAA GUUC UUC   uuuuucugua  a
|| ||||  |||   || ||||||||||| |||| |||   ||||||||||   
cc caua  uga   cc caaucgguuUU CAAG AAG   AAAAAGacau  u
  -    aa   uaa  -           U    C   CCC          uc 

Annotation confidence Medium

Genome context

13: 72353089-72353189 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-2285u

Mature bta-miR-2285u-5p

• Accession: MIMAT0051045
• Description: Bos taurus bta-miR-2285u-5p mature miRNA
• Sequence: 16 - UGGCCAAAAUGUUCAUUC - 33
• Evidence: experimental ; Illumina [1]

Mature bta-miR-2285u-3p

• Accession: MIMAT0031094
• Description: Bos taurus bta-miR-2285u-3p mature miRNA
• Sequence: 57 - GAAAAACCCGAACGAACUUU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103