miRBase entry: bta-mir-2285u

Stem-loop bta-mir-2285u


Accession
MI0025197
Description
Bos taurus bta-mir-2285u precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
11 open access papers mention bta-mir-2285u
(15 sentences)

Sequence

5400 reads, 3 reads per million, 67 experiments
ggaguaugcuggcguuggccaaaauguucauuccaauuuuucuguaccaucuuacaGAAAAACCCGAACGAACUUUuuggcuaacccaauaguaaauaccc
((.(((((((((.(((((((((((.((((.(((...((((((((((......))))))))))...))).)))).)))))))))))))...)))..))))))

Structure
  a    --   ---  c           u    a   caa          cc 
gg guau  gcu   gg guuggccaaaa guuc uuc   uuuuucugua  a
|| ||||  |||   || ||||||||||| |||| |||   ||||||||||   
cc caua  uga   cc caaucgguuUU CAAG AAG   AAAAAGacau  u
  -    aa   uaa  -           U    C   CCC          uc 


Annotation confidence Not enough data
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Genome context
chr13: 73356047-73356147 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2285u
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2285u

Accession MIMAT0031094
Description Bos taurus bta-miR-2285u mature miRNA
Sequence 57 - GAAAAACCCGAACGAACUUU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103