Stem-loop osa-MIR1437b

Accession

MI0025198

Description

Oryza sativa osa-MIR1437b precursor miRNA

Literature search

1 open access papers mention osa-MIR1437b
(1 sentences)

Sequence

40 reads, 28 reads per million, 2 experiments

cggaggaaggaggccggcgcacagaggacgagaggugacggcgcguggggaGGGAGGAAACAGUGCCUAGUGcggcgccggagcucgccagcacgcggaaggagguagcggcgguggcggagcgccggcaagcucuccgcgcccuggccgccguccuccucaccucacuccugcGUGCUGGCGAGCUCCGGUGCCGCAcuaggcaccguucccucccuccccgcgcgccaucaccgcucguccucugugcgccggccuccuuccuccg
((((((((((((((((((((((((((((((((.(((((.((((((((((((((((((.(((.((((((((((((((((((((((((((((((((((((.(((((((((.(((((((((((.((((.((........))))))))..)))))))))...)).))))).)).)))))))))))))))))))))))))))))))))))).))).)))))))))))))))))).))))).))))))))))))))))))))))))))))))))

Structure

                                a     c                  A   A                                    a  -     -  --c         --  a    c  caa 
cggaggaaggaggccggcgcacagaggacgag gguga ggcgcguggggaGGGAGG AAC GUGCCUAGUGcggcgccggagcucgccagcacgcgg ag gaggu ag   ggcgguggc  gg gcgc gg   g
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||| ||   |||||||||  || |||| ||    
gccuccuuccuccggccgcgugucuccugcuc ccacu ccgcgcgccccucccucc uug cacggaucACGCCGUGGCCUCGAGCGGUCGUGcguc uc cucca uc   cugccgccg  cc cgcg cc   c
                                g     a                  c   c                                    c  a     c  cuc         gu  -    -  ucu 

Annotation confidence Not enough data

Genome context

Chr8: 3955862-3956129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1437b

Mature osa-miR1437b-5p

• Accession: MIMAT0029953
• Description: Oryza sativa osa-miR1437b-5p mature miRNA
• Sequence: 52 - GGGAGGAAACAGUGCCUAGUG - 72
• Evidence: experimental ; 454 [1]

Mature osa-miR1437b-3p

• Accession: MIMAT0029954
• Description: Oryza sativa osa-miR1437b-3p mature miRNA
• Sequence: 175 - GUGCUGGCGAGCUCCGGUGCCGCA - 198
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227