Stem-loop osa-MIR7693

Accession

MI0025200

Description

Oryza sativa osa-MIR7693 precursor miRNA

Literature search

1 open access papers mention osa-MIR7693
(1 sentences)

Sequence

99700 reads, 394.0 reads per million, 142 experiments

gggcgaugaggaaucuucuggaagguguggugccacuccggcagucgcagccuccucaacaugggaauggcgacaguuggguugaggaggcuagagguuuccgcucuucAUCGAUGGCUGUCUGUCCUUGCCUccucggcccucgcugccgaugaagaacaagaaguuauccggcggcgaggGCCGAGGAGGUGAGGACGGACguccaucgaugaagagcgaaaaccuccagccuccucaacucaauugccgacauucccauguugaggaggcugccacugccggaguggcaccgcaccuuccaaaagauuccucaucgcc
.((((((((((((((((.(((((((((((((((((((((((((((.(((((((((((((((((((((((.((.(((((((((((((((((((.(((((((.((((((((((((((((.(((((((((((((((((((((((((((((((((..((..(((.....))).))))))))))))))))))))))))))))))))))).)))))))))))))))).))))))).))))))))))))))))))).)).))))))))))))))))))))))).))))))))))))))))))))))))))).))))))))))))))))

Structure

g                c                           c                       g  a                   a       c                C                                 au  ag   a 
 ggcgaugaggaaucuu uggaagguguggugccacuccggcagu gcagccuccucaacaugggaaug cg caguuggguugaggaggcu gagguuu cgcucuucAUCGAUGG UGUCUGUCCUUGCCUccucggcccucgcugccg  ga  aac a
 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||  ||| g
 ccgcuacuccuuagaa accuuccacgccacggugaggccguca cgucggaggaguuguacccuuac gc guuaacucaacuccuccga cuccaaa gcgagaaguagcuacc gCAGGCAGGAGUGGAGGAGCCGggagcggcggc  cu  uug a
-                a                           c                       a  c                   c       a                u                                 --  -a   a 

Annotation confidence Low

Genome context

12: 25875099-25875419 [-]

Mature osa-miR7693-5p

• Accession: MIMAT0029957
• Description: Oryza sativa osa-miR7693-5p mature miRNA
• Sequence: 110 - AUCGAUGGCUGUCUGUCCUUGCCU - 133
• Evidence: experimental ; 454 [1]

Mature osa-miR7693-3p

• Accession: MIMAT0029958
• Description: Oryza sativa osa-miR7693-3p mature miRNA
• Sequence: 183 - GCCGAGGAGGUGAGGACGGAC - 203
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227