Stem-loop osa-MIR7694

Accession

MI0025201

Description

Oryza sativa osa-MIR7694 precursor miRNA

Sequence

84304 reads, 318.0 reads per million, 142 experiments

uuacucccuuugucccaaaauauagcaaccuaguacuggauuagUCACCACCUAGUAUUAUGAAUCUGgacagagagggguuggacagagggcucuguccaUAUUCGUAGUGCUAGGUGGUGUCUaauccaauacuaggcugcuauauuuuuggauggagggaguag
.((((((((((((((.(((((((((((.(((((((.((((((((.((((((((((((((((((((.(((((((((...(......)......))))))))).)))))))))))))))))))).)))))))).))))))).))))))))))).)))))))))))))).

Structure

u              c           a       c        U                    C         ---agg gu 
 uacucccuuugucc aaaauauagca ccuagua uggauuag CACCACCUAGUAUUAUGAAU UGgacagag      g  u
 |||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||      |   
 augagggagguagg uuuuauaucgu ggaucau accuaaUC GUGGUGGAUCGUGAUGCUUA accugucuc      c  g
g              u           c       a        U                    U         gggaga ag 

Annotation confidence Medium

Genome context

10: 18864335-18864501 [-]

Mature osa-miR7694-5p

• Accession: MIMAT0029959
• Description: Oryza sativa osa-miR7694-5p mature miRNA
• Sequence: 45 - UCACCACCUAGUAUUAUGAAUCUG - 68
• Evidence: experimental ; 454 [1]

Mature osa-miR7694-3p

• Accession: MIMAT0029960
• Description: Oryza sativa osa-miR7694-3p mature miRNA
• Sequence: 102 - UAUUCGUAGUGCUAGGUGGUGUCU - 125
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227