Stem-loop osa-MIR7695

Accession

MI0025202

Description

Oryza sativa osa-MIR7695 precursor miRNA

Literature search

5 open access papers mention osa-MIR7695
(20 sentences)

Sequence

165 reads, 114 reads per million, 2 experiments

gaguaaaaugcacuagcgguccuuaaacuuaucgggagguuucacuuaaguccacgaacuugcaaagcgcacaucgaggucucuaaacuugguuuauuguaucaucccgguccaaagccacguuugauuguggucuUGCCUAUGUGGCACGCCACGUGAAugaugacauggaauuuuuuuuauuuuuuucucccuucuuccuucuuuuuucaccacugcgacaaccccuccccucguuccgccucucaccaccgagaaaaaagaaggaagaaagagaaaaaaagaaggaagaagggagaaaaaaauaaaaaaaauuccaugucauuauccACGUGAUGUGCCACGUAGGCAagaccacagucaaaugcggcuuugaaccggaaugauauaauaaaccaaguuuagggaucucgaugugcacuuugcaaguucguggaucuaagugaaaccuccugacaaguuuaagaaccgcugguguauuuuacuc
((((((((((((((((((((.(((((((((.(((((((((((((((((.((((((((((((((((((.(((((((((((((((((((((((((((((((((((((.(((((.(((((((.(((((((((((((((((((((((((((((((.((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((.................(((.(.((.(((....((((......)))).....))).)).)...))).))))))))))))))))))))))))))))))))))))))))))))))))))).)))))).))))))))))))))))))))))))))))))).))))))).))))).))))))))))))))))))))))))))))))))))))).)))))))))))))))))).))))))))))))))))).))))))))).))))))))))))))))))))

Structure

                    c         a                 a                  c                                     c     c       a                               C      A                                                   caccacugcgacaaccc   --c c  g   -cgcc    ac 
gaguaaaaugcacuagcggu cuuaaacuu ucgggagguuucacuua guccacgaacuugcaaag gcacaucgaggucucuaaacuugguuuauuguaucau ccggu caaagcc cguuugauuguggucuUGCCUAUGUGGCACG CACGUG Augaugacauggaauuuuuuuuauuuuuuucucccuucuuccuucuuuuuu                 cuc   c uc uuc     ucuc  c
|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                 |||   | || |||     ||||   
cucauuuuauguggucgcca gaauuugaa aguccuccaaagugaau uaggugcuugaacguuuc cguguagcucuagggauuugaaccaaauaauauagua ggcca guuucgg guaaacugacaccagaACGGAUGCACCGUGU GUGCAc uauuacuguaccuuaaaaaaaauaaaaaaagagggaagaaggaagaaaaaa                 gag   g ag aag     agag  a
                    a         c                 c                  a                                     a     a       c                               A      c                                                   ----------------a   aaa a  g   aaaaa    cc 

Annotation confidence Low

Genome context

Chr1: 11666716-11667202 [-]

Mature osa-miR7695-5p

• Accession: MIMAT0029961
• Description: Oryza sativa osa-miR7695-5p mature miRNA
• Sequence: 137 - UGCCUAUGUGGCACGCCACGUGAA - 160
• Evidence: experimental ; 454 [1]

Mature osa-miR7695-3p

• Accession: MIMAT0029962
• Description: Oryza sativa osa-miR7695-3p mature miRNA
• Sequence: 331 - ACGUGAUGUGCCACGUAGGCA - 351
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227