Stem-loop mtr-MIR169i

Accession

MI0025203

Description

Medicago truncatula mtr-MIR169i precursor miRNA

Literature search

12 open access papers mention mtr-MIR169i
(58 sentences)

Sequence

7591 reads, 85.0 reads per million, 101 experiments

gauuUGAGCCAAAGAUGACUUGCCGGcaugcugccugaaaagcaagaaggguguuguuuugcuGGCAGUUGUCAUUGGUUCAUGuu
(((.((((((((.(((((((.(((((((.((.((((............))))...))..)))))))))))))).)))))))).)))

Structure

   u        A       U       -u  --u    gaaaa 
gau UGAGCCAA GAUGACU GCCGGca  gc   gccu     g
||| |||||||| ||||||| |||||||  ||   ||||      
uuG ACUUGGUU CUGUUGA CGGucgu  ug   uggg     c
   U        A       -       uu  uug    aagaa 

Annotation confidence High

Genome context

Unknown

Mature mtr-miR169i-5p

• Accession: MIMAT0029963
• Description: Medicago truncatula mtr-miR169i-5p mature miRNA
• Sequence: 5 - UGAGCCAAAGAUGACUUGCCGG - 26
• Evidence: experimental ; Illumina [1]

Mature mtr-miR169i-3p

• Accession: MIMAT0055266
• Description: Medicago truncatula mtr-miR169i-3p mature miRNA
• Sequence: 64 - GGCAGUUGUCAUUGGUUCAUG - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553