Stem-loop mtr-MIR7697

Accession

MI0025226

Description

Medicago truncatula mtr-MIR7697 precursor miRNA

Sequence

gguccgaucuauaUCCGAGAUAUUUGAUCGGAGGcuugaaauuucuuauccuuuuuuuuuuuuuuuaugauugugacaguucaugggaagaugauccauacggaugggucucaucuggugacaguggagcuucacugaacagauagguugcaaagcacagguuaucagaugauuucgcuguaauggacaucuccccaugaacugucacaaucauaaaaaaaaggauaauaaauuucaagccUCCGAUCAAAUAGAUCGGAUAuagaucggauc
((((((((((((((((((..((((((((((((((((((((((((.(((((((((((((.......((((((((((((((((((((((.(((((.(((((((((.((((..((((((((((((.(((..((..(.(((......))))..))....)))..)))))))))))).)))))))).)))))))))).))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))..))))))))))))))))))

Structure

                  GA                        c             uuuuuuu                      a     a     -    a    uc            -a   --ga  uu a   aa 
gguccgaucuauaUCCGA  UAUUUGAUCGGAGGcuugaaauuu uuauccuuuuuuu       uaugauugugacaguucauggg agaug uccau acgg uggg  ucaucuggugac  gug    gc  c cug  c
||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||| ||||| ||||| |||| ||||  ||||||||||||  |||    ||  | |||   
cuaggcuagauAUAGGCU  AUAAACUAGCCUccgaacuuuaaa aauaggaaaaaaa       auacuaacacugucaaguaccc ucuac aggua uguc gcuu  aguagacuauug  cac    cg  g gau  a
                  AG                        u             -------                      c     -     a    -    -u            ga   gaaa  uu -   ag 

Annotation confidence Not enough data

Genome context

chr3: 16805134-16805406 [+]

Mature mtr-miR7697-5p

• Accession: MIMAT0029994
• Description: Medicago truncatula mtr-miR7697-5p mature miRNA
• Sequence: 14 - UCCGAGAUAUUUGAUCGGAGG - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR7697-3p

• Accession: MIMAT0029995
• Description: Medicago truncatula mtr-miR7697-3p mature miRNA
• Sequence: 242 - UCCGAUCAAAUAGAUCGGAUA - 262
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105