Stem-loop mtr-MIR399s

Accession

MI0025231

Description

Medicago truncatula mtr-MIR399s precursor miRNA

Literature search

9 open access papers mention mtr-MIR399s
(22 sentences)

Sequence

ugcaguugaauuacaGGGUGAGUUCUCCAUUGGCAGGuagcuagucacuauaugauaugcauugcaaucauuucuuagugugcaaucUGCCAAAGGAGAUUUGCCCAGcgauucuccugcaac
(((((..(((((.(.((((((((.((((.(((((((((.((....(((((.(((((.(((...))))))))....))))).)).))))))))).)))))))))))).).)))))..)))))..

Structure

--     uu     a a        U    A         a  uagu     ---u     a   a 
  ugcag  gaauu c GGGUGAGU CUCC UUGGCAGGu gc    cacua    augau ugc  
  |||||  ||||| | |||||||| |||| ||||||||| ||    |||||    ||||| ||| u
  acguc  cuuag G CCCGUUUA GAGG AACCGUcua cg    gugau    uacua acg  
ca     cu     c A        -    A         a  ---u     ucuu     -   u 

Annotation confidence Not enough data

Genome context

chr8: 23989511-23989633 [+]

Mature mtr-miR399s-5p

• Accession: MIMAT0030003
• Description: Medicago truncatula mtr-miR399s-5p mature miRNA
• Sequence: 16 - GGGUGAGUUCUCCAUUGGCAGG - 37
• Evidence: experimental ; Illumina [1]

Mature mtr-miR399s-3p

• Accession: MIMAT0030004
• Description: Medicago truncatula mtr-miR399s-3p mature miRNA
• Sequence: 88 - UGCCAAAGGAGAUUUGCCCAG - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105