Stem-loop mtr-MIR2592bo

Accession

MI0025233

Description

Medicago truncatula mtr-MIR2592bo precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592bo
(2 sentences)

Sequence

aauucaaacuuggcaaaCGGCCAGGACUCAAGCAUUUCGaucggcauucauguuuuuccuuugaaaagauuaaauucuuguuagucugguuuagaugaagguauuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagccuaacaaaaauuuauuauuuucaaaggaaaacaugaaugucgggcgAAAUGCUUGAGUCCUGUUGUUuggcaaguuugaauu
((((((((((((.((((((((.(((((((((((((((((..(((((((((((((((.((((((((((...((((((.(((((((.(((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).)).))))))).))))))...)))))))))))))))))))))))))..))))))))))))))))))))))))).))))))))))))

Structure

            g        C                 au               u          gau      c       u  - g         a     -          -       a 
aauucaaacuug caaaCGGC AGGACUCAAGCAUUUCG  cggcauucauguuuu ccuuugaaaa   uaaauu uuguuag cu g uuuagauga gguau uaagugucaa ggaauga  
|||||||||||| |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||   |||||| ||||||| || | ||||||||| ||||| |||||||||| ||||||| c
uuaaguuugaac guUUGUUG UCCUGAGUUCGUAAAgc  gcuguaaguacaaaa ggaaacuuuu   auuuaa aacaauc ga c aaaucuacu ccaua guucacgguu cuuuacu  
            g        -                 gg               -          auu      a       c  a g         a     a          g       c 

Annotation confidence Not enough data

Genome context

chr4: 43332476-43332721 [-]

Mature mtr-miR2592bo-5p

• Accession: MIMAT0030007
• Description: Medicago truncatula mtr-miR2592bo-5p mature miRNA
• Sequence: 18 - CGGCCAGGACUCAAGCAUUUCG - 39
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bo-3p

• Accession: MIMAT0030008
• Description: Medicago truncatula mtr-miR2592bo-3p mature miRNA
• Sequence: 211 - AAAUGCUUGAGUCCUGUUGUU - 231
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105