Stem-loop bdi-MIR5174e

Accession

MI0025289

Description

Brachypodium distachyon bdi-MIR5174e precursor miRNA

Literature search

2 open access papers mention bdi-MIR5174e
(4 sentences)

Sequence

30245 reads, 234.0 reads per million, 21 experiments

uagcugcauuguacucccucuguuccauAAAGAUUGGCACGGCUUUGAACUagggcuaguucaaaaucaugccaaccuUUAUGGAACGGAGGGAGUAGcugcuaaaauuuu
((((.((....(((((((((((((((((((((.((((((.((.(((((((((....))))))))).)).)))))).))))))))))))))))))))))).)))).......

Structure

-------    u  auug                     A      C  C         g 
       uagc gc    uacucccucuguuccauAAAG UUGGCA GG UUUGAACUa g
       |||| ||    ||||||||||||||||||||| |||||| || |||||||||  
       aucg cG    AUGAGGGAGGCAAGGUAUUuc aaccgu cu aaacuugau g
uuuuaaa    u  ----                     c      a  a         c 

Annotation confidence Low

Genome context

3: 37067795-37067905 [+]

Mature bdi-miR5174e-5p.1

• Accession: MIMAT0030068
• Description: Brachypodium distachyon bdi-miR5174e-5p.1 mature miRNA
• Sequence: 29 - AAAGAUUGGCACGGCUUUGAACU - 51
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5174e-3p.1

• Accession: MIMAT0030069
• Description: Brachypodium distachyon bdi-miR5174e-3p.1 mature miRNA
• Sequence: 79 - UUAUGGAACGGAGGGAGUAG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443