Stem-loop bdi-MIR159b

Accession

MI0025295

Description

Brachypodium distachyon bdi-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Sequence

ugguuuugaggugGAGCUCCUAUCAUUCCAAUGAAAGGUCUGUCAGAAGGGUGAUACAGCUGCUUGUUCAUGGUUCCCacuuauccuaucuccauuagaaaggaggagguaggcuuguggUUUGCAUGACCGAGGAGCCGCAUCCACCCCUUGCCGACCGCUGUUUGGAUUGAAGGGAGCUCUGcaucuugaucuuuc
.((((..((.(((((((((((.(((.(((((.....((((.((.((..(((((((.(.(((.((((.(((((....((((....(((((((((...........)))))))))...))))....))))).)))).))).).)).))))))).)).)))).....))))).))).))))))))))).))..))))....

Structure

---u    uu  g           A   U     UGAAA    U  C  AA     -  A A   G    U     GUUC    uuau         auua 
    gguu  ga gugGAGCUCCU UCA UCCAA     GGUC GU AG  GGGUG AU C GCU CUUG UCAUG    CCac    ccuaucucc    g
    ||||  || ||||||||||| ||| |||||     |||| || ||  ||||| || | ||| |||| |||||    ||||    |||||||||    a
    cuag  cu cGUCUCGAGGG AGU AGGUU     CCAG CG UC  CCCAC UA G CGA GAGC AGUAC    ggug    ggauggagg    a
cuuu    uu  a           A   U     UGUCG    C  U  --     C  C C   G    C     GUUU    -uuc         agga 

Annotation confidence Not enough data

Genome context

2: 1091342-1091539 [+]

Mature bdi-miR159b-5p.1

• Accession: MIMAT0030081
• Description: Brachypodium distachyon bdi-miR159b-5p.1 mature miRNA
• Sequence: 14 - GAGCUCCUAUCAUUCCAAUGA - 34
• Evidence: experimental ; Illumina [1]

Mature bdi-miR159b-5p.2

• Accession: MIMAT0030082
• Description: Brachypodium distachyon bdi-miR159b-5p.2 mature miRNA
• Sequence: 35 - AAGGUCUGUCAGAAGGGUGAUAC - 57
• Evidence: experimental ; Illumina [1]

Mature bdi-miR159b-5p.3

• Accession: MIMAT0030083
• Description: Brachypodium distachyon bdi-miR159b-5p.3 mature miRNA
• Sequence: 58 - AGCUGCUUGUUCAUGGUUCCC - 78
• Evidence: experimental ; Illumina [1]

Mature bdi-miR159b-3p.3

• Accession: MIMAT0030084
• Description: Brachypodium distachyon bdi-miR159b-3p.3 mature miRNA
• Sequence: 121 - UUUGCAUGACCGAGGAGCCGC - 141
• Evidence: experimental ; Illumina [1]

Mature bdi-miR159b-3p.2

• Accession: MIMAT0030085
• Description: Brachypodium distachyon bdi-miR159b-3p.2 mature miRNA
• Sequence: 142 - AUCCACCCCUUGCCGACCGCUG - 163
• Evidence: experimental ; Illumina [1]

Mature bdi-miR159b-3p.1

• Accession: MIMAT0030086
• Description: Brachypodium distachyon bdi-miR159b-3p.1 mature miRNA
• Sequence: 164 - UUUGGAUUGAAGGGAGCUCUG - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443