Stem-loop bdi-MIR5163b

Accession

MI0025301

Description

Brachypodium distachyon bdi-MIR5163b precursor miRNA

Literature search

1 open access papers mention bdi-MIR5163b
(14 sentences)

Sequence

caaacaauugagcaucCACCCAACUGAAAUAUUUAAAaauaauuggagcaacuaaagcuaucaagauuggauccaguuaugauagcugcuauacggaggggagaggaaaagggaguccaaaacacaaggaaaguguuguuucaguuauuuuUAGAUAUUUCAGGUUGUGUGGAuagcgaauugguggaa
....(((((..((((((((.((((((((((((((((((((((((((((((((...((((((((.(((((....))))).)))))))).................(((........)))................)))))))))))))))))))))))))))).)))).)))))).)).)))))......

Structure

--caaa     ga  -      C    -                            --------------------------------------------uaa        a     g 
      caauu  gc aucCAC CAAC UGAAAUAUUUAAAaauaauuggagcaac                                               agcuauca gauug a
      |||||  || |||||| |||| ||||||||||||||||||||||||||||                                               |||||||| |||||  
      guuaa  cg uAGGUG GUUG ACUUUAUAGAUuuuuauugacuuuguug                                               ucgauagu uugac u
aaggug     -g  a      U    G                            ugaaaggaacacaaaaccugagggaaaaggagaggggaggcauaucg        a     c 

Annotation confidence Not enough data

Genome context

4: 11948702-11948890 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5163b

Mature bdi-miR5163b-5p

• Accession: MIMAT0030097
• Description: Brachypodium distachyon bdi-miR5163b-5p mature miRNA
• Sequence: 17 - CACCCAACUGAAAUAUUUAAA - 37
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5163b-3p

• Accession: MIMAT0030098
• Description: Brachypodium distachyon bdi-miR5163b-3p mature miRNA
• Sequence: 152 - UAGAUAUUUCAGGUUGUGUGGA - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443