Accession
MI0025301
Description
Brachypodium distachyon
bdi-MIR5163b precursor miRNA
Literature search
1 open access papers mention bdi-MIR5163b
(14 sentences)
(14 sentences)
Sequence
51862
reads,
728.0
reads per million, 21 experiments
caaacaauugagCAUCCACCCAACUGAAAUAUUUaaaaauaauuggagcaacuaaagcuaucaagauuggauccaguuaugauagcugcuauacggaggggagaggaaaagggaguccaaaacacaaggaaaguguuguuucaguuauuuuUAGAUAUUUCAGGUUGUGUGGAUagcgaauugguggaa
....(((((..((((((((.((((((((((((((((((((((((((((((((...((((((((.(((((....))))).)))))))).................(((........)))................)))))))))))))))))))))))))))).)))).)))))).)).)))))......
....(((((..((((((((.((((((((((((((((((((((((((((((((...((((((((.(((((....))))).)))))))).................(((........)))................)))))))))))))))))))))))))))).)))).)))))).)).)))))......
Structure
--caaa ga - C - --------------------------------------------uaa a g
caauu gC AUCCAC CAAC UGAAAUAUUUaaaaauaauuggagcaac agcuauca gauug a
||||| || |||||| |||| |||||||||||||||||||||||||||| |||||||| |||||
guuaa cg UAGGUG GUUG ACUUUAUAGAUuuuuauugacuuuguug ucgauagu uugac u
aaggug -g a U G ugaaaggaacacaaaaccugagggaaaaggagaggggaggcauaucg a c
Annotation confidence
Medium
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Genome context
4: 11948702-11948890 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR5163b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bdi-miR5163b-5p
| Accession | MIMAT0030097 |
| Description | Brachypodium distachyon bdi-miR5163b-5p mature miRNA |
| Sequence | 13 - CAUCCACCCAACUGAAAUAUUU - 34 |
| Evidence |
experimental
Illumina [1] |
Mature bdi-miR5163b-3p
| Accession | MIMAT0030098 |
| Description | Brachypodium distachyon bdi-miR5163b-3p mature miRNA |
| Sequence | 152 - UAGAUAUUUCAGGUUGUGUGGAU - 174 |
| Evidence |
experimental
Illumina [1] |
References
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