Stem-loop bdi-MIR5174c

Accession

MI0025304

Description

Brachypodium distachyon bdi-MIR5174c precursor miRNA

Literature search

1 open access papers mention bdi-MIR5174c
(3 sentences)

Sequence

8603 reads, 87.0 reads per million, 21 experiments

cgcaaguuaaauguuacucccuccguucuaugaagaUUGGCGUGACUUUGAACUAacuauagcuacaguucaaaaccaugucAAUUUUGCGUGGAACUGAGGGAGCCgccaaauucgguuucgguucgac
................(((((((.((((((((((((((((((((..((((((((............))))))))..)))))))))))).)))))))).)))))))(((((......))...)))......

Structure

---------cgcaaguuaaauguua       c        -            AC        Aacua 
                         cucccuc guucuaug aagaUUGGCGUG  UUUGAACU     u
                         ||||||| |||||||| ||||||||||||  ||||||||      
                         GAGGGAG CAAGGUGC UUUUAAcuguac  aaacuuga     a
cagcuuggcuuuggcuuaaaccgCC       U        G            ca        caucg 

Annotation confidence Low

Genome context

4: 40461587-40461716 [-]

Mature bdi-miR5174c-5p

• Accession: MIMAT0030103
• Description: Brachypodium distachyon bdi-miR5174c-5p mature miRNA
• Sequence: 37 - UUGGCGUGACUUUGAACUA - 55
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5174c-3p

• Accession: MIMAT0030104
• Description: Brachypodium distachyon bdi-miR5174c-3p mature miRNA
• Sequence: 83 - AAUUUUGCGUGGAACUGAGGGAGCC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443