Stem-loop bdi-MIR5174d

Accession

MI0025305

Description

Brachypodium distachyon bdi-MIR5174d precursor miRNA

Literature search

1 open access papers mention bdi-MIR5174d
(3 sentences)

Sequence

48149 reads, 394.0 reads per million, 21 experiments

uucaacugauuucccuccguuucauAAAGAUUGGCACGGAUUUGAACUaaaccuaguuuaaagccaugccAAUCUUUAUGGAACGGAGagaguacuuguguguc
....((....(((.((((((((((((((((((((((.((.(((((((((....))))))))).)).)))))))))))))))))))))).))).....)).....

Structure

-uuca  -ugau   c                      C  A         a 
     ac     uuc cuccguuucauAAAGAUUGGCA GG UUUGAACUa a
     ||     ||| |||||||||||||||||||||| || |||||||||  
     ug     gag GAGGCAAGGUAUUUCUAAccgu cc aaauuugau c
cugug  uucau   a                      a  g         c 

Annotation confidence Low

Genome context

1: 36001972-36002075 [-]

Mature bdi-miR5174d-5p

• Accession: MIMAT0030105
• Description: Brachypodium distachyon bdi-miR5174d-5p mature miRNA
• Sequence: 26 - AAAGAUUGGCACGGAUUUGAACU - 48
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5174d-3p

• Accession: MIMAT0030106
• Description: Brachypodium distachyon bdi-miR5174d-3p mature miRNA
• Sequence: 71 - AAUCUUUAUGGAACGGAG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443