Stem-loop bdi-MIR5185d

Accession

MI0025308

Description

Brachypodium distachyon bdi-MIR5185d precursor miRNA

Literature search

1 open access papers mention bdi-MIR5185d
(1 sentences)

Sequence

7979 reads, 81.0 reads per million, 21 experiments

gcaaacgggaugcugcgaaagUCCCGCUUCUAGUUCAUUUUUcaaaucuuuuauucaaaauuuucuucagaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCgggacuuucgcgggaucccguuugcacc
(((((((((((.(((((((((((((((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).))))))))))))))))))))))))).)))))))))))...

Structure

---           g                         U                     a    c 
   gcaaacgggau cugcgaaagUCCCGCUUCUAGUUCA UUUUcaaaucuuuuauucaaa uuuu u
   ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||  
   cguuugcccua ggcgcuuucagggCGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaga u
cca           g                         U                     -    c 

Annotation confidence Low

Genome context

1: 66835948-66836081 [+]

Mature bdi-miR5185d-5p

• Accession: MIMAT0030111
• Description: Brachypodium distachyon bdi-miR5185d-5p mature miRNA
• Sequence: 22 - UCCCGCUUCUAGUUCAUUUUU - 42
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5185d-3p

• Accession: MIMAT0030112
• Description: Brachypodium distachyon bdi-miR5185d-3p mature miRNA
• Sequence: 86 - UUUGAGAAUUGAACUAGAAGC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443