Stem-loop bdi-MIR5185f

Accession

MI0025310

Description

Brachypodium distachyon bdi-MIR5185f precursor miRNA

Literature search

1 open access papers mention bdi-MIR5185f
(1 sentences)

Sequence

6019 reads, 56.0 reads per million, 21 experiments

gaucccgcggaagUCCCGCUUCUAGUUCAUUUUUcaaaucuucuauuccaaauuuuguucagaauuugaauaagagaUUUGAGAAUUGAACUAGAAGCaggacuuucgcg
.....(((((((((((.((((((((((((.((((((((((((.(((((.(((((((....)))))))))))).)))))))))))).)))))))))))).)))))))))))

Structure

gaucc           C            U            c     c       g 
     cgcggaagUCC GCUUCUAGUUCA UUUUcaaaucuu uauuc aaauuuu u
     ||||||||||| |||||||||||| |||||||||||| ||||| |||||||  
     gcgcuuucagg CGAAGAUCAAGU AAGAGUUUagag auaag uuuaaga u
-----           a            U            a     -       c 

Annotation confidence Low

Genome context

3: 44959226-44959335 [-]

Mature bdi-miR5185f-5p

• Accession: MIMAT0030115
• Description: Brachypodium distachyon bdi-miR5185f-5p mature miRNA
• Sequence: 14 - UCCCGCUUCUAGUUCAUUUUU - 34
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5185f-3p

• Accession: MIMAT0030116
• Description: Brachypodium distachyon bdi-miR5185f-3p mature miRNA
• Sequence: 78 - UUUGAGAAUUGAACUAGAAGC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443