Stem-loop bdi-MIR5185g

Accession

MI0025311

Description

Brachypodium distachyon bdi-MIR5185g precursor miRNA

Literature search

1 open access papers mention bdi-MIR5185g
(1 sentences)

Sequence

6234 reads, 57.0 reads per million, 21 experiments

ugcaaccgggauccgcgaaagUCCCGCUUCUAGUUCAUUUUUcaaaucuucuauucaaaauuuuguucagaauuugaauaagagaUUUGAGAAUUGAACUAGAAGCgggauuuucgcgggau
............(((((((((((((((((((((((((.((((((((((((.((((((((.((((....)))))))))))).)))))))))))).)))))))))))))))))))))))))...

Structure

ugcaaccgggau                         U            c        a    g 
            ccgcgaaagUCCCGCUUCUAGUUCA UUUUcaaaucuu uauucaaa uuuu u
            ||||||||||||||||||||||||| |||||||||||| |||||||| ||||  
            ggcgcuuuuagggCGAAGAUCAAGU AAGAGUUUagag auaaguuu aaga u
---------uag                         U            a        -    c 

Annotation confidence Low

Genome context

4: 10669865-10669986 [+]

Mature bdi-miR5185g-5p

• Accession: MIMAT0030117
• Description: Brachypodium distachyon bdi-miR5185g-5p mature miRNA
• Sequence: 22 - UCCCGCUUCUAGUUCAUUUUU - 42
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5185g-3p

• Accession: MIMAT0030118
• Description: Brachypodium distachyon bdi-miR5185g-3p mature miRNA
• Sequence: 86 - UUUGAGAAUUGAACUAGAAGC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443