Stem-loop bdi-MIR5185k

Accession

MI0025315

Description

Brachypodium distachyon bdi-MIR5185k precursor miRNA

Literature search

1 open access papers mention bdi-MIR5185k
(1 sentences)

Sequence

6136 reads, 57.0 reads per million, 21 experiments

gaucccgcaaaagUCCCGCUUCUAGUUCAUUUUUcaaaucuucuauucaaaauuuuguucagaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCaggacuuucgcg
.....(((.(((((((.((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).)))))))))))).))))))).)))

Structure

gaucc   a       C            U                     a    g 
     cgc aaagUCC GCUUCUAGUUCA UUUUcaaaucuucuauucaaa uuuu u
     ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||  
     gcg uuucagg CGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaga u
-----   c       a            U                     -    c 

Annotation confidence Low

Genome context

5: 24868302-24868411 [-]

Mature bdi-miR5185k-5p

• Accession: MIMAT0030125
• Description: Brachypodium distachyon bdi-miR5185k-5p mature miRNA
• Sequence: 14 - UCCCGCUUCUAGUUCAUUUUU - 34
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5185k-3p

• Accession: MIMAT0030126
• Description: Brachypodium distachyon bdi-miR5185k-3p mature miRNA
• Sequence: 78 - UUUGAGAAUUGAACUAGAAGC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443