Stem-loop bdi-MIR7708a

Accession

MI0025319

Description

Brachypodium distachyon bdi-MIR7708a precursor miRNA

Sequence

cagaacacaccauccgauuguGUUUUUCCUCAGUACCGUUACAAUuuuguagacauuugcacagcacgccagcuagucuaaaauggaaaguuugacuuuuuuccccucaggauggcgcuuuuugcuugggaggacgacgguuuugcaccauuuuuuucucuaauugaaaauuuggccccaaaagacgguacguaagugucaacuuuggacauuauuugauuaaaaaauuguucagcauuuagccucaaguugaaucacaacaguccacaaaaucauagguuuaaaauucaggucggggguauuguggaaaaaguaacacuuuucguuuuaggccaaguaauguguuguggcaaaugaucacaaaauUGUAAUGGUACUGAACAAAGACGCaauccggcgguguguuucg
..(((((((((.((.((((((((((((..(((((((((((((((((((((.(((((((((((((((((...(((.((((((((((((((((...(((((((((.((((.....((((.....))))...))))(((((.(((((...(((..(((((........)))))..)))......))))).)).)))((((....))))((((((...(((.....)))...))))))(((..((.((((.(.((((((.........((...........))......)))))).).)))).)).))))))))))))...))))))))))))))))..)))..)))))))).))))))).)))))))))))))))))))))))..)))))))))))).)).)))))))))..

Structure

ca         a  c            CC                     a  -       -        cca   -a                uug         cccucaggauggcgcuuuuugcuugggaggacgacgguuuugcaccauuuuuuucucuaauugaaaauuuggccccaaaagacgguacguaagugucaacuuuggacauuauuugauuaaaaaauuguuca   uu  g    a g      cacaacagu  acaa 
  gaacacacc uc gauuguGUUUUU  UCAGUACCGUUACAAUuuugu ga cauuugc acagcacg   gcu  gucuaaaauggaaagu   acuuuuuuc                                                                                                                                   gca  ua ccuc a uugaau         cc    a
  ||||||||| || ||||||||||||  ||||||||||||||||||||| || ||||||| ||||||||   |||  ||||||||||||||||   |||||||||                                                                                                                                   |||  || |||| | ||||||         ||    a
  uuugugugg gg cuaaCGCAGAAA  AGUCAUGGUAAUGUuaaaaca cu guaaacg uguugugu   uga  cggauuuugcuuuuca   ugaaaaagg                                                                                                                                   ugu  au gggg u gacuua         gg    u
gc         c  c            CA                     -  a       g        -aa   ac                caa         -----------------------------------------------------------------------------------------------------------------------------------   -u  g    c g      ---aaauuu  auac 

Annotation confidence Not enough data

Genome context

4: 31535894-31536302 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7708a

Mature bdi-miR7708a-5p

• Accession: MIMAT0030133
• Description: Brachypodium distachyon bdi-miR7708a-5p mature miRNA
• Sequence: 22 - GUUUUUCCUCAGUACCGUUACAAU - 45
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7708a-3p

• Accession: MIMAT0030134
• Description: Brachypodium distachyon bdi-miR7708a-3p mature miRNA
• Sequence: 367 - UGUAAUGGUACUGAACAAAGACGC - 390
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443