Stem-loop bdi-MIR7710

Accession

MI0025321

Description

Brachypodium distachyon bdi-MIR7710 precursor miRNA

Sequence

768 reads, 10.0 reads per million, 21 experiments

ugguccuucgcuacuacagaucgugaugucaacuuugaaaaauuaUUCCGAGCACACCUAGCGACgcugguaccuaccauaaccucuucaucuagcuaggguauaaagagugacuaaugaagauaugguagguaUCGACGAUGCUAGAUGUGCUCagaaugauguuucaaaauugaugucacaaacuauaguagcgaaggaccaac
((((((((((((((((.((...((((((((((.(((((((.(((((((.(((((((.((((((.((.((((((((((((((...(((((((.((((...............).)))))))))))))))))))))))).)).)))))).))))))).))))))).))))))).))))))))))...)).))))))))))))))))..

Structure

--                c  auc          c       a       C       C      A  c              acc       c   - uagggu 
  ugguccuucgcuacua ag   gugaugucaa uuugaaa auuaUUC GAGCACA CUAGCG Cg ugguaccuaccaua   ucuucau uag c      a
  |||||||||||||||| ||   |||||||||| ||||||| ||||||| ||||||| |||||| || ||||||||||||||   ||||||| ||| |      u
  accaggaagcgaugau uc   cacuguaguu aaacuuu uaguaag CUCGUGU GAUCGU GC GCUauggaugguau   agaagua auc g      a
ca                a  aaa          a       g       a       A      A  A              ---       -   a ugagaa 

Annotation confidence Medium

Genome context

4: 46018159-46018364 [+]

Mature bdi-miR7710-5p

• Accession: MIMAT0030137
• Description: Brachypodium distachyon bdi-miR7710-5p mature miRNA
• Sequence: 46 - UUCCGAGCACACCUAGCGAC - 65
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7710-3p

• Accession: MIMAT0030138
• Description: Brachypodium distachyon bdi-miR7710-3p mature miRNA
• Sequence: 135 - UCGACGAUGCUAGAUGUGCUC - 155
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443