Stem-loop bdi-MIR7711

Accession

MI0025322

Description

Brachypodium distachyon bdi-MIR7711 precursor miRNA

Sequence

57312 reads, 629.0 reads per million, 21 experiments

ggauaauagaaacAUACUUAGCCUCUUUGACAAUCUUgaugauagaauuucuaaauuagaagCCAUAAGUGAAAUCAACUCAUUCUgaauuuuaugaccaagauaacgauaaugaaucucuuuguuuuaaaugucuaagauguuuuugcauuaccaagucaaauucugcaacuaucgcaacacaagcuaagaaguuacccuuaagguauugugaacuugcucacuggaucuucuaaaaggcauagcguaagggaugucuuauuacgaauaauugccauuuugaaauuucuuguugaacacaauuggcuuuuagaggagccaucgagcaacuuuacaaugaacuuaaugguaauuucuuagcuugugaugggaucauugcagaauuugauuugguaaugcaagaccaucuuaggcguauuaaaaaacagagagauucauuagcauuauccuagccauaaaauucagUAUGAGUCGAUUUCUCUUAUGGCUucuaacuugcaaauuuuaucaucaAGAUUGUUAAAGAGGCCAAGUAUUUcuuuguuauc
.(((((((((...((((((.((((((((((((((((((((((((((((((.(((.((((((((((((((.((((((.((((((.((((((((((((.(...(((((.(.(((((((((((((((((((..((((((((((((.((((((((((((((((((((((((((((..(((.((.(((((((((((((((((((.(((((.(((((((((.((((((..(((.(((((((((((((((..(....)..))))))).............((((..(((....(((.....)))..))).))))..)))))))).)))..)))))).)))))))))..))))).))))))))))))))))))).)).)))..)))))))))))))))))))))))))))).)))))))))))).....))))))))))))))))))).).)))))...).)))))))))))).)))))).)))))).)))))))))))))).))).)))))))))))))))))))))))))))))).))))))...)))))))))

Structure

g         aac      A                              c   a              U      A      U            a caa     c a                   ---aa            u                            cu   g  a                   c     -g         c      ac   a        aaggcauagcguaagggaugucuuauuacgaauaauu    uu   aaau   u 
 gauaauaga   AUACUU GCCUCUUUGACAAUCUUgaugauagaauuu uaa uuagaagCCAUAAG GAAAUC ACUCAU CUgaauuuuaug c   gauaa g uaaugaaucucuuuguuuu     augucuaagaug uuuugcauuaccaagucaaauucugcaa  auc ca cacaagcuaagaaguuacc uuaag  uauugugaa uugcuc  ugg ucuucuaa                                     gcca  uug    uuc u
 |||||||||   |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||| |||||||||||| |   ||||| | |||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||  ||| || ||||||||||||||||||| |||||  ||||||||| ||||||  ||| ||||||||                                     ||||  |||    ||| g
 cuauuguuu   UAUGAA CGGAGAAAUUGUUAGAacuacuauuuuaaa guu aaucuUCGGUAUUC CUUUAG UGAGUA gacuuaaaauac g   cuauu c auuacuuagagagacaaaa     ugcggauucuac agaacguaaugguuuaguuuaagacguu  uag gu guguucgauucuuuaaugg aauuc  guaacauuu aacgag  acc aggagauu                                     cggu  aac    aag u
-         cUU      C                              c   c              U      C      U            c auc     a g                   aauua            c                            ac   g  a                   u     aa         c      cu   g        -----------------------------------uu    -u   --ac   u 

Annotation confidence Medium

Genome context

3: 4809448-4809995 [-]

Mature bdi-miR7711-5p.2

• Accession: MIMAT0030139
• Description: Brachypodium distachyon bdi-miR7711-5p.2 mature miRNA
• Sequence: 14 - AUACUUAGCCUCUUUGACAAUCUU - 37
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7711-5p

• Accession: MIMAT0030141
• Description: Brachypodium distachyon bdi-miR7711-5p mature miRNA
• Sequence: 63 - CCAUAAGUGAAAUCAACUCAUUCU - 86
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7711-3p

• Accession: MIMAT0030144
• Description: Brachypodium distachyon bdi-miR7711-3p mature miRNA
• Sequence: 466 - UAUGAGUCGAUUUCUCUUAUGGCU - 489
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7711-3p.2

• Accession: MIMAT0030145
• Description: Brachypodium distachyon bdi-miR7711-3p.2 mature miRNA
• Sequence: 514 - AGAUUGUUAAAGAGGCCAAGUAUUU - 538
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443