Stem-loop bdi-MIR7716

Accession

MI0025327

Description

Brachypodium distachyon bdi-MIR7716 precursor miRNA

Sequence

gagacggauucgugUCAGUUGCUAGAGAAGAACGAAACgaccgucagcagaggaggaggugucaucggaggucuugaucaaacaaagagaaauaagguggcggccucaggagucaucucugcuugccacagaaauugcaggaagaggaggagaaaauggaggguucucuggagaagaugagaugaccucaucuucuuuggagaaccuuucaguuuuuucuccucuuccugcaacuuuucguuccaagcagaggcgacggccucgccaccuuguuucucuuuuuucacgaccuucgacgcuuccucugacgacgauggcggucguUUCGUUCUUCUCCAGUAAUUGACCugaauccauc
.....(((((((.((((((((((.((((((((((((((((((((((...(.((((((((((((...(((((((.(((......((((((((((((((((((((((......(((.((((((((((..((((((.(((((((((((((((((((((.(((((((((((((((((((((((((.....))))))))))))))))))))))))).))))))))))))))))))))).)))).))..)))))))))).)))))))..))))))))))))))))))..))).)))))))))))))))))))..).....)))))))))))))))))))))).)))))))))).)))))))...

Structure

gagac       u          A                      --gca -a            auc       u   ucaaac                  --    ucagga   a          cc  -    a                     a                         a 
     ggauucg gUCAGUUGCU GAGAAGAACGAAACgaccguca     g  ggaggagguguc   ggagguc uga      aaagagaaauaagguggc  ggcc      guc ucucugcuug  ac agaa uugcaggaagaggaggagaaa uggaggguucucuggagaagaugag u
     ||||||| |||||||||| ||||||||||||||||||||||     |  ||||||||||||   ||||||| |||      ||||||||||||||||||  ||||      ||| ||||||||||  || |||| ||||||||||||||||||||| ||||||||||||||||||||||||| g
     ccuaagu CAGUUAAUGA CUCUUCUUGCUUugcuggcggu     c  ucuccuucgcag   cuuccag acu      uuucucuuuguuccaccg  ccgg      cag ggagacgaac  ug uuuu aacguccuucuccucuuuuuu acuuuccaagagguuucuucuacuc a
--cua       C          C                      agcag ag            ---       c   ----uu                  cu    ------   c          cu  c    c                     g                         c 

Annotation confidence Not enough data

Genome context

2: 7864984-7865341 [-]

Mature bdi-miR7716-5p

• Accession: MIMAT0030154
• Description: Brachypodium distachyon bdi-miR7716-5p mature miRNA
• Sequence: 15 - UCAGUUGCUAGAGAAGAACGAAAC - 38
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7716-3p

• Accession: MIMAT0030155
• Description: Brachypodium distachyon bdi-miR7716-3p mature miRNA
• Sequence: 325 - UUCGUUCUUCUCCAGUAAUUGACC - 348
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443